U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX12292421: Metagenome human lung virome
1 ILLUMINA (Illumina MiSeq) run: 12,360 spots, 1.8M bases, 1.1Mb downloads

Design: cDNA_randomPriming/RANDOM PCR
Submitted by: Medical University of Vienna
Study: Bronchoalveolar lavage fluid and blood from human lung transplant recipients Metagenome
show Abstracthide Abstract
This exploratory study characterized the temporal and body-compartment-specific adaptation of eukaryotic viruses after lung transplantation in human patients. To investigate whether the donor-derived virome affects the recipient virome in other body-compartments and to identify ecological dependencies among different virus species, we used dat amodeling to analyse viral abundances in BALF and plasma at different time points after surgery. In summary, our analysis of virome dynamics after lung transplantation revealed host, body compartment and time-specific dependency patterns among viruses. Furthermore, our results suggested genetic adaptation to the host microenvironment at the level of the virome and support the hypothesis of functional complementarity between Anellovirus groups and other persistent viruses.
Sample: Lung virome
SAMN21511919 • SRS10266180 • All experiments • All runs
Organism: metagenome
Library:
Name: S15
Instrument: Illumina MiSeq
Strategy: WGS
Source: METAGENOMIC
Selection: other
Layout: SINGLE
Runs: 1 run, 12,360 spots, 1.8M bases, 1.1Mb
Run# of Spots# of BasesSizePublished
SRR1600473712,3601.8M1.1Mb2021-09-22

ID:
16212194

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...